STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW37181.1CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
APW39916.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.957
APW40549.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.930
APW39996.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.920
APW40725.1
PHB depolymerase esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.519
APW37180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.473
APW37577.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.456
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.