STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW39606.1TctC; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)    
Predicted Functional Partners:
APW38809.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.798
APW37915.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.792
APW37762.1
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.761
APW39604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
APW39605.1
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
APW39608.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.651
APW39609.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.645
APW39607.1
3-(3-hydroxyphenyl)propionate hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
APW38810.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.534
APW37761.1
Tripartite tricarboxylate transporter TctB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.420
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.