STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001956315_01012Unannotated protein. (691 aa)    
Predicted Functional Partners:
GCA_001956315_01010
Unannotated protein.
       0.623
GCA_001956315_01011
Unannotated protein.
       0.623
GCA_001956315_01009
Unannotated protein.
       0.467
GCA_001956315_03076
Unannotated protein.
  
  
 0.401
Your Current Organism:
Sphingomonas montana
NCBI taxonomy Id: 1843236
Other names: CGMCC 1.15646, DSM 103337, S. montana, Sphingomonas montana Manandhar et al. 2018, Sphingomonas sp. W16RD, strain W16RD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.