STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOF98087.1outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein; [MU] COG1538 Outer membrane protein. (455 aa)    
Predicted Functional Partners:
AOF97493.1
RND_mfp: efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.933
AOF97712.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.871
AOF97894.1
RND_mfp: efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.814
AOF96231.1
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein; [V] COG0841 Cation/multidrug efflux pump.
 0.806
AOF97341.1
RND_mfp: efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.804
AOF97791.1
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein; [V] COG0841 Cation/multidrug efflux pump.
 0.802
AOF97954.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.748
AOF97876.1
8a0101: efflux pump membrane family protein; [V] COG1566 Multidrug resistance efflux pump.
 
 0.722
BSY17_58
RND_mfp: efflux transporter, RND family, MFP subunit; [V] COG1566 Multidrug resistance efflux pump.
 
 0.720
AOF95511.1
type_I_hlyD: type I secretion membrane fusion, HlyD family protein; [M] COG0845 Membrane-fusion protein.
  
 0.513
Your Current Organism:
Sphingobium sp. RAC03
NCBI taxonomy Id: 1843368
Other names: S. sp. RAC03
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