STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (262 aa)    
Predicted Functional Partners:
deoB
Phosphopentomutase DeoB; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
  
 
 0.958
tktA_1
Transketolase TktA; Belongs to the transketolase family.
   
 0.954
rpe
Ribulose-phosphate 3-epimerase Rpe; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.951
prs
Ribose-phosphate pyrophosphokinase Prs; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.933
rpiB
Ribose-5-phosphate isomerase B.
     
 0.929
algC
Phosphomannomutase/phosphoglucomutase AlgC.
    
 0.917
rbsK
Putative pfkB family carbohydrate kinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.912
APG46515.1
Short-chain dehydrogenase/reductase.
     
 0.806
tdcG
L-serine dehydratase TdcG; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.690
APG47638.1
Putative kinase.
  
    0.668
Your Current Organism:
Phaeobacter porticola
NCBI taxonomy Id: 1844006
Other names: DSM 103148, LMG 29594, LMG:29594, P. porticola, Phaeobacter porticola Breider et al. 2017, Phaeobacter sp. P100, Phaeobacter sp. P104, Phaeobacter sp. P97, strain P97
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