STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ92200.1ABC-2 type transport system permease protein. (259 aa)    
Predicted Functional Partners:
SHJ92177.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.942
SHJ92220.1
Cytochrome c oxidase assembly protein subunit 15.
 
   
 0.898
SHJ92165.1
Alpha-1,6-mannosyltransferase.
 
   
 0.829
SHJ92143.1
Transcriptional regulator.
 
     0.643
SHK35817.1
LysM domain-containing protein.
  
     0.608
SHK35914.1
LysM domain-containing protein.
  
     0.595
SHL19653.1
Transcriptional regulator, TetR family.
  
     0.577
SHL28346.1
Hypothetical protein.
  
     0.572
SHJ92119.1
Iron-regulated ABC transporter membrane component SufB.
       0.557
SHJ92101.1
Iron-regulated ABC transporter permease protein SufD.
       0.557
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.