Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ96598.1 | SHK90102.1 | SAMN05443637_101329 | SAMN05443637_11430 | DNA helicase IV. | PDZ domain-containing protein. | 0.596 |
SHJ96598.1 | SHK90712.1 | SAMN05443637_101329 | SAMN05443637_11457 | DNA helicase IV. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.663 |
SHJ96598.1 | SHK90725.1 | SAMN05443637_101329 | SAMN05443637_11458 | DNA helicase IV. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.663 |
SHJ96598.1 | SHK94918.1 | SAMN05443637_101329 | SAMN05443637_1151 | DNA helicase IV. | Single-strand DNA-binding protein. | 0.568 |
SHJ96598.1 | SHL40089.1 | SAMN05443637_101329 | SAMN05443637_12714 | DNA helicase IV. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.677 |
SHJ96598.1 | rpoA | SAMN05443637_101329 | SAMN05443637_11643 | DNA helicase IV. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.917 |
SHJ96598.1 | rpoB | SAMN05443637_101329 | SAMN05443637_11682 | DNA helicase IV. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
SHJ96598.1 | rpoC | SAMN05443637_101329 | SAMN05443637_11681 | DNA helicase IV. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.943 |
SHJ96598.1 | rpoZ | SAMN05443637_101329 | SAMN05443637_101151 | DNA helicase IV. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.930 |
SHJ96598.1 | whiB-2 | SAMN05443637_101329 | SAMN05443637_10884 | DNA helicase IV. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.602 |
SHK90102.1 | SHJ96598.1 | SAMN05443637_11430 | SAMN05443637_101329 | PDZ domain-containing protein. | DNA helicase IV. | 0.596 |
SHK90102.1 | whiB-2 | SAMN05443637_11430 | SAMN05443637_10884 | PDZ domain-containing protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.511 |
SHK90712.1 | SHJ96598.1 | SAMN05443637_11457 | SAMN05443637_101329 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA helicase IV. | 0.663 |
SHK90712.1 | SHK90725.1 | SAMN05443637_11457 | SAMN05443637_11458 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.997 |
SHK90712.1 | SHL40089.1 | SAMN05443637_11457 | SAMN05443637_12714 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.963 |
SHK90712.1 | rpoB | SAMN05443637_11457 | SAMN05443637_11682 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.638 |
SHK90712.1 | rpoC | SAMN05443637_11457 | SAMN05443637_11681 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.440 |
SHK90725.1 | SHJ96598.1 | SAMN05443637_11458 | SAMN05443637_101329 | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | DNA helicase IV. | 0.663 |
SHK90725.1 | SHK90712.1 | SAMN05443637_11458 | SAMN05443637_11457 | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.997 |
SHK90725.1 | SHL40089.1 | SAMN05443637_11458 | SAMN05443637_12714 | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.743 |
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