STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK41456.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
SHK41474.1
Sugar transporter.
     0.994
SHJ97155.1
MFS transporter, MHS family, alpha-ketoglutarate permease.
  
  
 0.784
SHK51566.1
Predicted arabinose efflux permease, MFS family.
 
   
 0.780
SHL07490.1
MFS transporter, MHS family, alpha-ketoglutarate permease.
  
     0.774
SHK38655.1
Predicted arabinose efflux permease, MFS family.
  
     0.772
SHK41494.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.723
SHK41514.1
acyl-CoA dehydrogenase.
       0.723
SHK41435.1
Protein tyrosine/serine phosphatase.
       0.496
SHK41534.1
Transcriptional regulator of acetoin/glycerol metabolism.
       0.432
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.