STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK45978.1Hydrogenase nickel incorporation protein HypB. (264 aa)    
Predicted Functional Partners:
hypA-2
Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.984
SHK72804.1
Ni,Fe-hydrogenase III large subunit.
   
 
 0.973
SHJ91443.1
Urease accessory protein.
  
 
 0.967
SHK45627.1
Hydrogenase maturation protein HypD.
 
  
 0.940
hypA
Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.931
SHK45646.1
Hydrogenase maturation protein HypC.
 
  
 0.921
SHK45757.1
Hydrogenase expression/formation protein HypC.
 
  
 0.909
SHK45674.1
Hydrogenase maturation protein, carbamoyl dehydratase HypE.
 
  
 0.881
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.842
SHK45900.1
[NiFe]-hydrogenase II apoprotein, ferredoxin-type subunit.
 
  
 0.838
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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