STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK46477.1Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. (498 aa)    
Predicted Functional Partners:
SHK08806.1
3-(3-hydroxy-phenyl)propionate hydroxylase/flavoprotein hydroxylase.
   
 
  0.549
SHK02762.1
Tetracenomycin A2 monooxygenase-dioxygenase.
   
 
  0.549
SHK42102.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 
  0.549
SHK87574.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 
  0.549
SHK57099.1
Hypothetical protein.
      
 0.469
SHK46495.1
Nitroreductase.
       0.461
SHK45115.1
Hypothetical protein.
  
     0.405
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.