STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK78450.1Protein of unknown function. (261 aa)    
Predicted Functional Partners:
SHK20163.1
PH domain-containing protein.
  
     0.761
SHK24221.1
Hypothetical protein.
  
     0.755
SHK46382.1
rhamnopyranosyl-N-acetylglucosaminyl-diphospho- decaprenol beta-1,3/1,4-galactofuranosyltransferase.
  
     0.751
SHK91324.1
Hypothetical protein.
  
     0.750
SHK78427.1
Hypothetical protein.
 
     0.736
SHJ91557.1
Protein of unknown function.
  
     0.715
SHL41205.1
Hypothetical protein.
  
     0.710
SHK81773.1
Hypothetical protein.
  
     0.709
SHL00687.1
Dienelactone hydrolase.
  
     0.709
SHL31543.1
LytR cell envelope-related transcriptional attenuator.
  
     0.709
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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