STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK92951.1DinB superfamily protein. (339 aa)    
Predicted Functional Partners:
SHL43045.1
Urea carboxylase.
   
  0.631
SHK92999.1
Nucleotidyltransferase domain-containing protein.
 
     0.604
SHK92974.1
Hypothetical protein.
       0.567
SHL02888.1
L-threonine ammonia-lyase.
    
  0.558
SHK96047.1
Asp/Glu/hydantoin racemase.
  
     0.446
SHK32450.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.441
SHL10531.1
Hypothetical protein.
  
     0.428
SHL03989.1
Transcriptional regulator, XRE family with cupin sensor.
    
 0.416
SHK17357.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.