STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK90400.1Predicted arabinose efflux permease, MFS family. (451 aa)    
Predicted Functional Partners:
SHK90431.1
Hypothetical protein.
       0.752
SHJ94224.1
Major Facilitator Superfamily protein.
  
     0.735
SHK02335.1
Major Facilitator Superfamily protein.
  
     0.705
SHK64475.1
Drug resistance transporter, EmrB/QacA subfamily.
  
    0.695
SHK16225.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
    0.692
SHK19932.1
MFS transporter, DHA2 family, methylenomycin A resistance protein.
  
     0.684
SHK37643.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
     0.676
SHL40403.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
  
     0.674
SHL17857.1
Major Facilitator Superfamily protein.
  
     0.662
SHK07192.1
Predicted arabinose efflux permease, MFS family.
  
     0.660
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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