STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK97541.1Metallopeptidase family M24. (230 aa)    
Predicted Functional Partners:
SHK50682.1
Dimethylglycine oxidase; Belongs to the GcvT family.
  
 0.853
SHK97562.1
Predicted dehydrogenase.
       0.732
SHL46525.1
Hypothetical protein.
  
     0.571
SHK04567.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
  
 0.549
SHK97523.1
Hypothetical protein.
       0.533
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.501
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.499
SHK93402.1
IMP dehydrogenase.
   
   0.490
SHL00275.1
IMP dehydrogenase.
   
   0.490
SHJ98146.1
Tetratricopeptide repeat-containing protein.
 
 
 
 0.453
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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