STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL03898.1Hypothetical protein. (300 aa)    
Predicted Functional Partners:
SHL03882.1
Phosphosulfolactate synthase.
     0.935
SHL03919.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
     0.858
SHL03976.1
Argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
 
     0.806
SHK15094.1
Protein of unknown function.
  
     0.766
SHK28961.1
Hypothetical protein.
  
     0.731
SHL03450.1
Alkylmercury lyase.
  
     0.722
SHL03944.1
D-cysteine desulfhydrase.
       0.692
SHJ98577.1
FMN reductase.
  
     0.691
SHK19055.1
Protein of unknown function.
  
     0.677
SHK53614.1
Hypothetical protein.
  
     0.676
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.