STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL07130.1Putative peptidoglycan binding domain-containing protein. (172 aa)    
Predicted Functional Partners:
SHL40955.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.528
SHK67578.1
Membrane carboxypeptidase (penicillin-binding protein).
     
 0.495
SHK80401.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.446
SHL40780.1
Hypothetical protein.
    
 0.446
SHK69786.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
    
 0.445
SHK44116.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.430
SHK69751.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
    
 0.425
SHL07111.1
Primary-amine oxidase.
       0.425
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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