Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK44116.1 | SHK67578.1 | SAMN05443637_106147 | SAMN05443637_11026 | N-acetylmuramoyl-L-alanine amidase. | Membrane carboxypeptidase (penicillin-binding protein). | 0.472 |
SHK44116.1 | SHK80401.1 | SAMN05443637_106147 | SAMN05443637_112102 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.950 |
SHK44116.1 | SHL07130.1 | SAMN05443637_106147 | SAMN05443637_11786 | N-acetylmuramoyl-L-alanine amidase. | Putative peptidoglycan binding domain-containing protein. | 0.430 |
SHK44116.1 | SHL40780.1 | SAMN05443637_106147 | SAMN05443637_12749 | N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.412 |
SHK44116.1 | SHL40955.1 | SAMN05443637_106147 | SAMN05443637_12758 | N-acetylmuramoyl-L-alanine amidase. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.560 |
SHK67578.1 | SHK44116.1 | SAMN05443637_11026 | SAMN05443637_106147 | Membrane carboxypeptidase (penicillin-binding protein). | N-acetylmuramoyl-L-alanine amidase. | 0.472 |
SHK67578.1 | SHK69786.1 | SAMN05443637_11026 | SAMN05443637_110144 | Membrane carboxypeptidase (penicillin-binding protein). | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | 0.530 |
SHK67578.1 | SHK80401.1 | SAMN05443637_11026 | SAMN05443637_112102 | Membrane carboxypeptidase (penicillin-binding protein). | N-acetylmuramoyl-L-alanine amidase. | 0.846 |
SHK67578.1 | SHL07130.1 | SAMN05443637_11026 | SAMN05443637_11786 | Membrane carboxypeptidase (penicillin-binding protein). | Putative peptidoglycan binding domain-containing protein. | 0.495 |
SHK67578.1 | SHL40955.1 | SAMN05443637_11026 | SAMN05443637_12758 | Membrane carboxypeptidase (penicillin-binding protein). | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.871 |
SHK69751.1 | SHK80401.1 | SAMN05443637_110142 | SAMN05443637_112102 | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | N-acetylmuramoyl-L-alanine amidase. | 0.723 |
SHK69751.1 | SHL07130.1 | SAMN05443637_110142 | SAMN05443637_11786 | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | Putative peptidoglycan binding domain-containing protein. | 0.425 |
SHK69786.1 | SHK67578.1 | SAMN05443637_110144 | SAMN05443637_11026 | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | Membrane carboxypeptidase (penicillin-binding protein). | 0.530 |
SHK69786.1 | SHK80401.1 | SAMN05443637_110144 | SAMN05443637_112102 | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | N-acetylmuramoyl-L-alanine amidase. | 0.512 |
SHK69786.1 | SHL07130.1 | SAMN05443637_110144 | SAMN05443637_11786 | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | Putative peptidoglycan binding domain-containing protein. | 0.445 |
SHK69786.1 | SHL40955.1 | SAMN05443637_110144 | SAMN05443637_12758 | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.975 |
SHK80401.1 | SHK44116.1 | SAMN05443637_112102 | SAMN05443637_106147 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.950 |
SHK80401.1 | SHK67578.1 | SAMN05443637_112102 | SAMN05443637_11026 | N-acetylmuramoyl-L-alanine amidase. | Membrane carboxypeptidase (penicillin-binding protein). | 0.846 |
SHK80401.1 | SHK69751.1 | SAMN05443637_112102 | SAMN05443637_110142 | N-acetylmuramoyl-L-alanine amidase. | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | 0.723 |
SHK80401.1 | SHK69786.1 | SAMN05443637_112102 | SAMN05443637_110144 | N-acetylmuramoyl-L-alanine amidase. | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). | 0.512 |
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