STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL21877.1Undecaprenyl-diphosphatase. (215 aa)    
Predicted Functional Partners:
SHK46531.1
Hypothetical protein.
 
  
 0.831
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.792
SHK64793.1
HAD-superfamily subfamily IB hydrolase, TIGR01490; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 0.657
SHL22001.1
Polysaccharide pyruvyl transferase family protein WcaK.
 
     0.597
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.595
SHK41409.1
Z1 domain-containing protein.
  
 
 0.594
SHK28984.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
    
 0.582
SHL14991.1
Hypothetical protein.
  
     0.577
SHJ94482.1
Cytochrome P450.
    
  0.576
SHJ97708.1
Cytochrome P450.
    
  0.576
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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