SHL24683.1 protein (Pseudonocardia thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHL24683.1

Hypothetical protein. (147 aa)

Predicted Functional Partners:

SHJ97481.1

0.997

SHL10922.1

0.990

SHK97355.1

0.936

SHK56995.1

0.883

SHJ98657.1

0.871

SHL02396.1

0.832

SHK06366.1

0.827

SHL24659.1

0.826

SHK50093.1

0.787

SHK67070.1

0.769

Your Current Organism:

Pseudonocardia thermophila

NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHJ97481.1	SHJ98657.1	SAMN05443637_101376	SAMN05443637_101447	Signal transduction histidine kinase.	His Kinase A (phospho-acceptor) domain-containing protein.	0.991
SHJ97481.1	SHK06366.1	SAMN05443637_101376	SAMN05443637_102222	Signal transduction histidine kinase.	Thioredoxin reductase (NADPH).	0.999
SHJ97481.1	SHK50093.1	SAMN05443637_101376	SAMN05443637_10755	Signal transduction histidine kinase.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.994
SHJ97481.1	SHK56995.1	SAMN05443637_101376	SAMN05443637_10877	Signal transduction histidine kinase.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.999
SHJ97481.1	SHK97355.1	SAMN05443637_101376	SAMN05443637_115118	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SHJ97481.1	SHL02396.1	SAMN05443637_101376	SAMN05443637_116105	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SHJ97481.1	SHL10922.1	SAMN05443637_101376	SAMN05443637_11876	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SHJ97481.1	SHL24683.1	SAMN05443637_101376	SAMN05443637_12247	Signal transduction histidine kinase.	Hypothetical protein.	0.997
SHJ98657.1	SHJ97481.1	SAMN05443637_101447	SAMN05443637_101376	His Kinase A (phospho-acceptor) domain-containing protein.	Signal transduction histidine kinase.	0.991
SHJ98657.1	SHK06366.1	SAMN05443637_101447	SAMN05443637_102222	His Kinase A (phospho-acceptor) domain-containing protein.	Thioredoxin reductase (NADPH).	0.951
SHJ98657.1	SHK50093.1	SAMN05443637_101447	SAMN05443637_10755	His Kinase A (phospho-acceptor) domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.894
SHJ98657.1	SHK56995.1	SAMN05443637_101447	SAMN05443637_10877	His Kinase A (phospho-acceptor) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.983
SHJ98657.1	SHK97355.1	SAMN05443637_101447	SAMN05443637_115118	His Kinase A (phospho-acceptor) domain-containing protein.	PAS domain S-box-containing protein.	0.999
SHJ98657.1	SHL02396.1	SAMN05443637_101447	SAMN05443637_116105	His Kinase A (phospho-acceptor) domain-containing protein.	Signal transduction histidine kinase.	0.957
SHJ98657.1	SHL10922.1	SAMN05443637_101447	SAMN05443637_11876	His Kinase A (phospho-acceptor) domain-containing protein.	PAS domain S-box-containing protein.	0.998
SHJ98657.1	SHL24683.1	SAMN05443637_101447	SAMN05443637_12247	His Kinase A (phospho-acceptor) domain-containing protein.	Hypothetical protein.	0.871
SHK06366.1	SHJ97481.1	SAMN05443637_102222	SAMN05443637_101376	Thioredoxin reductase (NADPH).	Signal transduction histidine kinase.	0.999
SHK06366.1	SHJ98657.1	SAMN05443637_102222	SAMN05443637_101447	Thioredoxin reductase (NADPH).	His Kinase A (phospho-acceptor) domain-containing protein.	0.951
SHK06366.1	SHK50093.1	SAMN05443637_102222	SAMN05443637_10755	Thioredoxin reductase (NADPH).	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.816
SHK06366.1	SHK56995.1	SAMN05443637_102222	SAMN05443637_10877	Thioredoxin reductase (NADPH).	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.984