STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL32038.1CsbD-like; Belongs to the UPF0337 (CsbD) family. (64 aa)    
Predicted Functional Partners:
SHK74919.1
CBS domain-containing protein.
  
  
 0.811
SHL24360.1
Hypothetical protein.
  
    0.696
SHL17765.1
PPOX class probable F420-dependent enzyme.
 
    0.661
SHL31066.1
Putative NADH-flavin reductase.
   
    0.649
SHK17116.1
General stress protein 26.
 
    0.645
SHK46366.1
ABC-2 type transport system ATP-binding protein.
  
    0.618
SHK04042.1
PPOX class probable F420-dependent enzyme.
  
    0.585
SHK37196.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.585
SHK84149.1
PPOX class probable F420-dependent enzyme.
  
    0.585
SHK97791.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.585
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.