STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL39878.1Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily. (795 aa)    
Predicted Functional Partners:
SHL39855.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.978
SHL38308.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.889
SHL20775.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.813
SHL00235.1
Hypothetical protein.
 
     0.786
SHL38327.1
Uncharacterized conserved protein, Alpha-E superfamily.
 
  
0.749
SHL39903.1
Transcriptional regulator, TetR family.
       0.746
SHL38347.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
  
0.720
SHK85775.1
Transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.588
SHL38423.1
Competence protein ComEC.
       0.552
SHL39926.1
Hypothetical protein.
       0.545
Your Current Organism:
Pseudonocardia thermophila
NCBI taxonomy Id: 1848
Other names: ATCC 19285, DSM 43832, IFO 15559, JCM 3095, NBRC 15559, VKM Ac-896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.