STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB82176.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
KXB82177.1
Hypothetical protein.
       0.773
KXB82178.1
Resolvase protein; KEGG: apb:SAR116_1288 4.0e-09 Resolvase, N-terminal domain-containing protein; Psort location: Cytoplasmic, score: 7.50.
       0.678
KXB82179.1
Resolvase protein; KEGG: apb:SAR116_1288 1.5e-07 Resolvase, N-terminal domain-containing protein; Psort location: Cytoplasmic, score: 7.50.
       0.678
KXB82173.1
Toxin secretion/phage lysis holin; Psort location: CytoplasmicMembrane, score: 9.55.
       0.527
KXB82175.1
Cpl-7 lysozyme protein; KEGG: mcu:HMPREF0573_11206 2.1e-144 N-acetylmuramoyl-L-alanine amidase.
       0.503
KXB82174.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.491
KXB82180.1
DNA-binding helix-turn-helix protein; KEGG: cja:CJA_3717 0.00042 dam; adenine-specific DNA methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
    0.490
KXB82181.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.490
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.