STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB82077.1Hypothetical protein; KEGG: hpa:HPAG1_1423 1.1e-51 hemolysin domain-containing protein K00088; Psort location: CytoplasmicMembrane, score: 8.78. (452 aa)    
Predicted Functional Partners:
KXB82076.1
Hypothetical protein; KEGG: hpa:HPAG1_1423 8.1e-40 hemolysin domain-containing protein K00088; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
0.953
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.842
KXB82078.1
KEGG: cfi:Celf_2655 0. 2-oxoglutarate dehydrogenase, E1 subunit; K00164 2-oxoglutarate dehydrogenase E1 component; Psort location: Cytoplasmic, score: 9.97.
       0.604
KXB82074.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: saq:Sare_2484 3.6e-30 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 7.50.
  
    0.506
KXB82075.1
Peptidase, M23 family; KEGG: aai:AARI_03820 6.6e-24 peptidase M23; Psort location: Extracellular, score: 9.60.
       0.465
KXB80658.1
IMP dehydrogenase family protein; KEGG: scy:SCATT_53580 2.1e-167 inosine 5-monophosphate dehydrogenase; K00088 IMP dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
    
  0.464
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
    0.462
KXB81642.1
Putative PhoH-like protein; KEGG: ttu:TERTU_3875 2.5e-68 phosphate starvation-inducible protein PhoH family protein, ATPase K06217; Psort location: Cytoplasmic, score: 9.97.
  
    0.420
KXB82073.1
KEGG: cfi:Celf_1403 4.4e-48 ribose 5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B; Psort location: Cytoplasmic, score: 7.50.
       0.416
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
    0.415
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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