Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXB79374.1 | KXB79848.1 | HMPREF1862_01999 | HMPREF1862_01597 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | 0.410 |
| KXB79374.1 | KXB80497.1 | HMPREF1862_01999 | HMPREF1862_01180 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent helicase DinG family protein; KEGG: shy:SHJG_6900 2.0e-132 ATP-dependent helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 7.50. | 0.935 |
| KXB79374.1 | KXB81166.1 | HMPREF1862_01999 | HMPREF1862_00891 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Bacterial group 3 Ig-like protein; KEGG: cpf:CPF_1087 3.2e-07 pullulanase; K01200 pullulanase. | 0.654 |
| KXB79374.1 | KXB81532.1 | HMPREF1862_01999 | HMPREF1862_00508 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | HRDC domain protein; KEGG: bcv:Bcav_2897 5.8e-165 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97. | 0.999 |
| KXB79374.1 | KXB82087.1 | HMPREF1862_01999 | HMPREF1862_00151 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: hhd:HBHAL_3214 5.6e-80 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50. | 0.759 |
| KXB79374.1 | polA | HMPREF1862_01999 | HMPREF1862_01512 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| KXB79374.1 | recA | HMPREF1862_01999 | HMPREF1862_00358 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.957 |
| KXB79374.1 | sbcD | HMPREF1862_01999 | HMPREF1862_00150 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.654 |
| KXB79374.1 | topA | HMPREF1862_01999 | HMPREF1862_00637 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.856 |
| KXB79848.1 | KXB79374.1 | HMPREF1862_01597 | HMPREF1862_01999 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.410 |
| KXB79848.1 | KXB81166.1 | HMPREF1862_01597 | HMPREF1862_00891 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | Bacterial group 3 Ig-like protein; KEGG: cpf:CPF_1087 3.2e-07 pullulanase; K01200 pullulanase. | 0.676 |
| KXB79848.1 | KXB82087.1 | HMPREF1862_01597 | HMPREF1862_00151 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | KEGG: hhd:HBHAL_3214 5.6e-80 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50. | 0.741 |
| KXB79848.1 | polA | HMPREF1862_01597 | HMPREF1862_01512 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.732 |
| KXB79848.1 | recA | HMPREF1862_01597 | HMPREF1862_00358 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.430 |
| KXB79848.1 | sbcD | HMPREF1862_01597 | HMPREF1862_00150 | KEGG: mcu:HMPREF0573_11260 2.2e-266 DNA-directed DNA polymerase K02334; Psort location: Cytoplasmic, score: 7.50. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.676 |
| KXB80316.1 | KXB82087.1 | HMPREF1862_01306 | HMPREF1862_00151 | Proteasome ATPase; KEGG: tfu:Tfu_1809 5.5e-121 vesicle-fusing ATPase K13527; Psort location: CytoplasmicMembrane, score: 8.78. | KEGG: hhd:HBHAL_3214 5.6e-80 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50. | 0.833 |
| KXB80497.1 | KXB79374.1 | HMPREF1862_01180 | HMPREF1862_01999 | ATP-dependent helicase DinG family protein; KEGG: shy:SHJG_6900 2.0e-132 ATP-dependent helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 7.50. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.935 |
| KXB80497.1 | KXB81166.1 | HMPREF1862_01180 | HMPREF1862_00891 | ATP-dependent helicase DinG family protein; KEGG: shy:SHJG_6900 2.0e-132 ATP-dependent helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 7.50. | Bacterial group 3 Ig-like protein; KEGG: cpf:CPF_1087 3.2e-07 pullulanase; K01200 pullulanase. | 0.932 |
| KXB80497.1 | KXB81532.1 | HMPREF1862_01180 | HMPREF1862_00508 | ATP-dependent helicase DinG family protein; KEGG: shy:SHJG_6900 2.0e-132 ATP-dependent helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 7.50. | HRDC domain protein; KEGG: bcv:Bcav_2897 5.8e-165 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97. | 0.942 |
| KXB80497.1 | KXB82087.1 | HMPREF1862_01180 | HMPREF1862_00151 | ATP-dependent helicase DinG family protein; KEGG: shy:SHJG_6900 2.0e-132 ATP-dependent helicase; K03722 ATP-dependent DNA helicase DinG; Psort location: Cytoplasmic, score: 7.50. | KEGG: hhd:HBHAL_3214 5.6e-80 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50. | 0.835 |
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