STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81818.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.68. (221 aa)    
Predicted Functional Partners:
KXB81819.1
tryptophan--tRNA ligase; KEGG: ahe:Arch_0389 1.8e-120 tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.773
KXB81820.1
Hypothetical protein.
       0.553
glgE
Alpha amylase, catalytic domain protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
       0.490
KXB81815.1
Hypothetical protein; KEGG: scb:SCAB_83371 7.3e-48 pep2B; hypothetical protein; K16146 maltokinase; Psort location: Cytoplasmic, score: 7.50.
       0.452
KXB81816.1
KEGG: cfi:Celf_2762 8.1e-198 trehalose synthase; K05343 maltose alpha-D-glucosyltransferase/ alpha-amylase; Psort location: Cytoplasmic, score: 9.97.
       0.452
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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