STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81822.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (40 aa)    
Predicted Functional Partners:
KXB81823.1
Glycogen debranching enzyme GlgX; KEGG: mcu:HMPREF0573_11141 2.3e-202 putative isoamylase; K02438 glycogen operon protein; Psort location: Cytoplasmic, score: 9.67; Belongs to the glycosyl hydrolase 13 family.
       0.709
KXB81824.1
KEGG: apb:SAR116_1870 4.0e-15 electron transfer flavoprotein subunit beta K03521; Psort location: Cytoplasmic, score: 7.50.
       0.488
KXB81825.1
KEGG: apb:SAR116_1869 1.4e-28 electron transfer flavoprotein subunit alpha K03522; Psort location: Cytoplasmic, score: 7.50.
       0.482
KXB81826.1
KEGG: bcv:Bcav_1361 2.3e-65 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.67.
       0.482
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.482
KXB81821.1
KEGG: heq:HPF32_0814 6.1e-74 hsdS_2; type I restriction-modification system specificity subunit; K01154 type I restriction enzyme, S subunit; Psort location: Cytoplasmic, score: 7.50.
       0.461
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.