STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81668.1Hydrogenase assembly chaperone HypC/HupF; Psort location: Cytoplasmic, score: 7.50. (75 aa)    
Predicted Functional Partners:
KXB81656.1
Hydrogenase expression/formation protein HypD; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.959
KXB81658.1
KEGG: sen:SACE_3074 2.5e-93 hydrogenase expression/formation protein HypE K04655.
 
 
 0.943
KXB81667.1
Hypothetical protein; KEGG: mcu:HMPREF0573_10777 6.2e-136 reducing hydrogenase subunit alpha; Psort location: Cytoplasmic, score: 9.97.
 
     0.854
KXB81661.1
Hydrogenase accessory protein HypB; KEGG: hdn:Hden_2088 7.2e-07 LAO/AO transporter ATPase; K07588 LAO/AO transport system kinase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.715
KXB81659.1
Carbamoyltransferase HypF; KEGG: mcu:HMPREF0573_10785 0. hydrogenase maturation protein K04656; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.626
hybF
Putative hydrogenase nickel insertion protein HypA; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.585
KXB81669.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.538
KXB81670.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.527
KXB81662.1
Putative hydrogenase-2 small chain; KEGG: mcu:HMPREF0573_10782 4.0e-189 hupA; hydrogenase K06282; Psort location: CytoplasmicMembrane, score: 9.51.
  
 
 0.518
KXB81663.1
Putative membrane-bound hydrogenase 1 large subunit; KEGG: mcu:HMPREF0573_10781 2.7e-293 hupB; hydrogenase K06281; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.447
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.