STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81576.1Hypothetical protein; KEGG: rha:RHA1_ro04199 5.5e-11 DNA polymerase III subunits gamma and tau K02343; Psort location: Cellwall, score: 9.20. (427 aa)    
Predicted Functional Partners:
KXB79422.1
Hypothetical protein; KEGG: ase:ACPL_6596 4.2e-13 putative E3 ubiquitin-protein ligase HERC4.
  
 0.830
KXB81577.1
Transposase-like protein; KEGG: cnc:CNE_2c19700 1.8e-10 DNA (cytosine-5-)-methyltransferase K07491; Psort location: Cytoplasmic, score: 7.50.
       0.562
KXB81578.1
KEGG: cyp:PCC8801_1159 1.7e-78 transposase, IS605 OrfB family; Psort location: Cytoplasmic, score: 7.50.
       0.562
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.526
KXB81575.1
Hypothetical protein.
       0.483
KXB81294.1
Hypothetical protein.
   
  0.453
KXB81295.1
LPXTG-motif protein cell wall anchor domain protein; Psort location: Cellwall, score: 9.20.
   
  0.453
KXB81017.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: mmw:Mmwyl1_1672 9.8e-18 beta strand repeat-containing protein.
   
  0.453
KXB81118.1
Regulator of condensation; KEGG: ase:ACPL_6596 1.0e-39 putative E3 ubiquitin-protein ligase HERC4; Psort location: Extracellular, score: 9.13.
   
  0.453
KXB80438.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: lsi:HN6_01178 5.2e-13 Zn-dependeant threonine dehydrogenase, putative; Psort location: Cellwall, score: 10.00.
   
  0.453
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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