STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81502.1ATP-grasp domain protein; KEGG: efu:HMPREF0351_11643 1.9e-40 carB2; ATP-grasp superfamily protein; Psort location: Cytoplasmic, score: 7.50. (447 aa)    
Predicted Functional Partners:
KXB81501.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
       0.658
KXB81500.1
Putative ribonuclease D; KEGG: tcu:Tcur_1761 1.6e-66 3'-5' exonuclease; K03684 ribonuclease D; Psort location: Cytoplasmic, score: 9.97.
       0.647
KXB81503.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.572
KXB80748.1
KEGG: bcv:Bcav_2038 0. carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
     
 0.465
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
   
  0.461
mihF
mIHF protein; KEGG: mts:MTES_3542 9.0e-08 gmk; guanylate kinase; K00942 guanylate kinase; Psort location: Cytoplasmic, score: 7.50.
  
     0.457
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.