STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81533.1Hypothetical protein; KEGG: dre:406335 0.0081 uba1, ube1, wu:fa01e08, wu:fb30f01, wu:fi21c11, wu:fj14g11, zgc:66143; ubiquitin-like modifier activating enzyme 1 K03178; Psort location: CytoplasmicMembrane, score: 8.16. (313 aa)    
Predicted Functional Partners:
KXB81826.1
KEGG: bcv:Bcav_1361 2.3e-65 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.67.
   
 0.917
KXB79296.1
ThiS family protein; KEGG: afw:Anae109_1160 0.0055 molybdopterin converting factor subunit 1; K03635 molybdopterin synthase catalytic subunit.
  
 0.886
KXB80213.1
Hypothetical protein; KEGG: sen:SACE_6661 6.1e-42 DNA-directed DNA polymerase K14161; Psort location: Cytoplasmic, score: 7.50.
  
 
  0.783
KXB81534.1
Putative hydrolase; Psort location: Cytoplasmic, score: 7.50.
 
     0.730
KXB80969.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
  
     0.728
KXB80681.1
Hypothetical protein; KEGG: gvg:HMPREF0421_20853 1.1e-09 brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.690
KXB79422.1
Hypothetical protein; KEGG: ase:ACPL_6596 4.2e-13 putative E3 ubiquitin-protein ligase HERC4.
    
 0.682
KXB79297.1
KEGG: apn:Asphe3_14300 1.0e-25 molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit; Psort location: Cytoplasmic, score: 7.50.
  
 0.675
moeB2
ThiF family protein; KEGG: paw:PAZ_c05440 2.2e-46 moeB; molybdopterin biosynthesis protein MoeB K11996; Psort location: Cytoplasmic, score: 9.67.
  
 0.675
KXB81863.1
Hypothetical protein; KEGG: sen:SACE_1077 1.2e-59 ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 7.50.
 
     0.669
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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