STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81539.1Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (208 aa)    
Predicted Functional Partners:
KXB81797.1
KEGG: ecm:EcSMS35_4265 3.1e-79 N-acylglucosamine 2-epimerase; Psort location: Cytoplasmic, score: 7.50.
      0.891
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
      
 0.769
KXB81541.1
Single-strand binding family protein.
  
   0.620
KXB81088.1
Exonuclease; KEGG: ske:Sked_28650 1.3e-48 DNA polymerase III subunit epsilon-like 3'-5' exonuclease; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
   
 0.612
KXB81538.1
KEGG: amd:AMED_1634 1.7e-117 ilvA; threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 7.50.
       0.543
KXB80971.1
KEGG: mcu:HMPREF0573_10707 1.5e-157 tRNA adenylyltransferase K00970; Psort location: Cytoplasmic, score: 7.50; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.521
KXB80505.1
S1 RNA binding domain protein; KEGG: iva:Isova_2074 1.5e-203 ribonuclease, Rne/Rng family; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.438
KXB81540.1
Hypothetical protein.
       0.433
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
  
 0.426
KXB80663.1
KEGG: bcv:Bcav_0228 8.4e-283 ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: Cytoplasmic, score: 7.50.
  
    0.426
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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