STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81547.1Von Willebrand factor type A domain protein. (639 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.532
KXB79835.1
Putative chlorophyll synthesis pathway protein BchC; KEGG: paw:PAZ_c06590 2.7e-87 tdh2; L-threonine 3-dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.522
KXB80443.1
ATPase family protein; KEGG: iva:Isova_0599 3.3e-98 ATPase; K03924 MoxR-like ATPase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.487
KXB79339.1
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
 
 0.481
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
  0.447
KXB81794.1
Diacylglycerol kinase catalytic domain protein; KEGG: ase:ACPL_7058 6.2e-26 putative lipid kinase yegS-like protein K07029; Psort location: CytoplasmicMembrane, score: 9.55.
    
  0.415
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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