STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81444.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (382 aa)    
Predicted Functional Partners:
KXB79827.1
Thrombospondin type 3 repeat-containing domain protein; KEGG: bbp:BBPR_0193 0.00032 1,2-A-L-fucosidase.
  
    0.761
KXB79672.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.728
KXB81309.1
Toxin-antitoxin system, toxin component, Fic domain protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.722
KXB80438.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: lsi:HN6_01178 5.2e-13 Zn-dependeant threonine dehydrogenase, putative; Psort location: Cellwall, score: 10.00.
  
    0.719
KXB81546.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: bbp:BBPR_0193 2.4e-10 1,2-A-L-fucosidase; Psort location: Cellwall, score: 9.25.
  
     0.717
KXB80257.1
KEGG: rca:Rcas_3651 1.2e-20 IS605 family transposase OrfB K07496; Psort location: Cytoplasmic, score: 7.50.
  
     0.640
KXB82170.1
Phage minor structural protein; KEGG: lme:LEUM_0857 0.0016 glycosyl hydrolase; K00689 dextransucrase; Psort location: Cytoplasmic, score: 7.50.
  
     0.618
KXB81569.1
KEGG: sis:LS215_1079 6.1e-22 transposase, IS605 OrfB family K07496; Psort location: Cytoplasmic, score: 7.50.
  
     0.616
KXB81870.1
YhgE/Pip domain protein; KEGG: ade:Adeh_4122 1.0e-05 GAF sensor hybrid histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.610
KXB81762.1
Hypothetical protein; KEGG: crd:CRES_0317 0.00015 ABC transporter ATP-binding protein/permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.579
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.