STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81257.1C-5 cytosine-specific DNA methylase; KEGG: ccb:Clocel_3986 8.3e-91 DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (344 aa)    
Predicted Functional Partners:
KXB80070.1
Transcriptional regulator, MerR family; KEGG: lpn:lpg1236 8.9e-137 modification methylase (Eco47II, Sau96I); K00558 DNA (cytosine-5-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 
0.669
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.531
KXB79866.1
KEGG: mcu:HMPREF0573_11248 5.5e-199 S-adenosylmethionine synthetase K00789; Psort location: Cytoplasmic, score: 9.97.
    
 0.531
KXB81258.1
Hypothetical protein.
       0.497
KXB79840.1
Hypothetical protein; KEGG: tva:TVAG_332600 5.5e-05 hypothetical protein; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 7.50.
 
     0.401
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.