STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80934.1SNARE-like domain protein; KEGG: pmg:P9301_18161 3.6e-14 dedA; DedA family alkaline phosphatase-like protein K01077; Psort location: CytoplasmicMembrane, score: 10.00. (219 aa)    
Predicted Functional Partners:
KXB81078.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
    
  0.756
KXB80643.1
KEGG: pfr:PFREUD_07400 1.3e-50 pmm; phosphomannomutase K07024; Psort location: Cytoplasmic, score: 7.50.
      0.750
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
    0.585
KXB80935.1
Hypothetical protein; KEGG: psa:PST_3725 2.6e-09 Mg2+ transport ATPase; K01531 Mg2+-importing ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.562
nadK
Putative inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
    
  0.535
KXB80937.1
Cytochrome C biogenesis protein transmembrane region; KEGG: rer:pREL1_0233 6.7e-36 putative disulfide bond formation protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.430
KXB81173.1
Transporter, major facilitator family protein; KEGG: tpr:Tpau_0550 1.8e-38 tRNA-guanine transglycosylase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.427
KXB80936.1
DsbA-like protein; KEGG: rer:pREL1_0232 6.0e-28 putative disulfide bond formation protein; Psort location: Cellwall, score: 8.76.
       0.417
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.