STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80979.1Putative ribose transport system permease protein RbsC; KEGG: rlt:Rleg2_4777 3.2e-84 monosaccharide-transporting ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family. (320 aa)    
Predicted Functional Partners:
KXB80977.1
Hypothetical protein; KEGG: bmd:BMD_3626 2.0e-91 two-component sensor histidine kinase/response regulator.
 
 0.999
KXB80978.1
KEGG: apn:Asphe3_10700 1.7e-151 monosaccharide ABC transporter ATP-binding protein, CUT2 family; K10441 ribose transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
 0.999
KXB80980.1
Glycosyl hydrolase family 35; KEGG: mpg:Theba_2293 3.6e-172 beta-galactosidase; K12308 beta-galactosidase; Psort location: Cytoplasmic, score: 7.50; Belongs to the glycosyl hydrolase 35 family.
 
    0.799
KXB80981.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.568
KXB80987.1
Dihydroxyacetone kinase, phosphotransfer subunit; KEGG: kfl:Kfla_6664 6.7e-123 phosphoenolpyruvate-protein phosphotransferase; K02768 PTS system, fructose-specific IIA component; K08483 phosphotransferase system, enzyme I, PtsI K11183; Psort location: Cytoplasmic, score: 10.00; Belongs to the PEP-utilizing enzyme family.
     
 0.566
KXB80982.1
Sugar-binding domain protein; KEGG: bcv:Bcav_3275 5.5e-57 LacI family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.514
KXB80451.1
Phosphocarrier, HPr family; KEGG: gpo:GPOL_c21140 3.7e-19 ptsH; phosphocarrier protein HPr K11189; Psort location: Cytoplasmic, score: 10.00.
     
 0.492
KXB80452.1
Phosphocarrier, HPr family; KEGG: sen:SACE_6246 5.7e-23 phosphoenolpyruvate-protein phosphotransferase K05881; Psort location: Cytoplasmic, score: 7.50.
     
 0.487
KXB80722.1
Hypothetical protein; KEGG: bcv:Bcav_2877 1.1e-09 LacI family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
 
 
  0.444
lacI4
Sugar-binding domain protein; KEGG: kra:Krad_0032 1.9e-31 alanine racemase; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.434
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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