STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80990.1Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00. (470 aa)    
Predicted Functional Partners:
KXB80991.1
KEGG: bcv:Bcav_0774 3.2e-36 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
       0.755
KXB80992.1
CarD-like protein; KEGG: apb:SAR116_1070 3.8e-17 transcriptional regulator K07736; Psort location: Cytoplasmic, score: 7.50.
       0.711
KXB80987.1
Dihydroxyacetone kinase, phosphotransfer subunit; KEGG: kfl:Kfla_6664 6.7e-123 phosphoenolpyruvate-protein phosphotransferase; K02768 PTS system, fructose-specific IIA component; K08483 phosphotransferase system, enzyme I, PtsI K11183; Psort location: Cytoplasmic, score: 10.00; Belongs to the PEP-utilizing enzyme family.
       0.515
KXB80988.1
KEGG: kfl:Kfla_6663 1.5e-54 dihydroxyacetone kinase, L subunit; K05879 dihydroxyacetone kinase, C-terminal domain.
       0.501
KXB80989.1
KEGG: pad:TIIST44_02530 8.6e-123 dihydroxyacetone kinase subunit DhaK; K05878 dihydroxyacetone kinase, N-terminal domain; Psort location: Cytoplasmic, score: 7.50.
       0.501
KXB80653.1
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.442
KXB80993.1
Ser/Thr phosphatase family protein; KEGG: ase:ACPL_8118 5.2e-45 putative metallophosphoesterase; Psort location: CytoplasmicMembrane, score: 9.55.
       0.420
KXB82074.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: saq:Sare_2484 3.6e-30 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 7.50.
 
     0.404
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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