STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81000.1Hypothetical protein; KEGG: dbr:Deba_0747 0.0037 membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease. (124 aa)    
Predicted Functional Partners:
KXB80537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.745
KXB81607.1
KEGG: psp:PSPPH_2917 0.00012 DNA-binding protein K00517; Psort location: Cytoplasmic, score: 7.50.
  
     0.737
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.736
KXB79287.1
KEGG: mcu:HMPREF0573_10554 7.5e-53 gpmB; phosphoglycerate mutase; Psort location: Cytoplasmic, score: 7.50.
  
     0.729
KXB80205.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.724
KXB80778.1
KEGG: bcv:Bcav_1739 8.2e-63 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cellwall, score: 8.75.
  
     0.711
KXB79372.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.706
KXB80292.1
[glutamate--ammonia-ligase] adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]
 
     0.696
KXB80294.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.687
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.683
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.