STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81173.1Transporter, major facilitator family protein; KEGG: tpr:Tpau_0550 1.8e-38 tRNA-guanine transglycosylase; Psort location: CytoplasmicMembrane, score: 10.00. (667 aa)    
Predicted Functional Partners:
KXB81174.1
Transcriptional regulator, MarR family; KEGG: apb:SAR116_2205 8.4e-06 transcriptional regulator.
       0.674
KXB81175.1
Hypothetical protein; KEGG: bbb:BIF_01573 6.0e-44 3-oxoacyl-ACP synthase.
       0.444
KXB80934.1
SNARE-like domain protein; KEGG: pmg:P9301_18161 3.6e-14 dedA; DedA family alkaline phosphatase-like protein K01077; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.427
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.