STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81178.1Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: fra:Francci3_0280 3.8e-39 tRNA-adenosine deaminase K01485; Psort location: Cytoplasmic, score: 7.50. (192 aa)    
Predicted Functional Partners:
KXB81637.1
GTP cyclohydrolase II; KEGG: ske:Sked_18160 2.3e-115 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Psort location: Cytoplasmic, score: 7.50; In the N-terminal section; belongs to the DHBP synthase family.
    
 0.953
KXB80804.1
Putative glycerate kinase; KEGG: mcu:HMPREF0573_11674 2.1e-89 glxK; glycerate kinase K00865; Psort location: Cytoplasmic, score: 7.50; Belongs to the glycerate kinase type-1 family.
 
 
    0.902
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
 0.855
KXB80226.1
HAD hydrolase, family IA, variant 3; KEGG: pop:POPTR_824722 1.0e-46 haloacid dehalogenase-like hydrolase family protein; Psort location: Cytoplasmic, score: 7.50.
 
  
  0.827
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
 
 0.799
KXB80736.1
KEGG: ske:Sked_35330 1.6e-91 exodeoxyribonuclease III; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.773
KXB79652.1
KEGG: mcu:HMPREF0573_10170 1.3e-71 putative exodeoxyribonuclease III; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.773
KXB80641.1
GroES-like protein; KEGG: ahe:Arch_0038 1.3e-149 alcohol dehydrogenase zinc-binding domain protein; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 
  0.700
hisE
KEGG: bfa:Bfae_16080 1.7e-30 phosphoribosyl-ATP pyrophosphatase; K01523 phosphoribosyl-ATP pyrophosphohydrolase; Psort location: Cytoplasmic, score: 7.50.
   
    0.662
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
 
 0.659
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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