STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80754.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (272 aa)    
Predicted Functional Partners:
KXB80753.1
Cold-shock DNA-binding domain protein; KEGG: hip:CGSHiEE_04760 3.2e-06 aspartate-semialdehyde dehydrogenase K03704; Psort location: Cytoplasmic, score: 9.97.
       0.835
KXB80755.1
Putative permease; KEGG: btk:BT9727_0241 4.3e-73 guanine-hypoxanthine permease; xanthine/uracil permease family protein K06901; Psort location: CytoplasmicMembrane, score: 10.00.
      0.800
KXB80494.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.739
KXB79361.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.730
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.703
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.665
KXB80537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.648
KXB80912.1
Lsr2 family protein; KEGG: xce:Xcel_2129 0.0041 DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
  
     0.643
KXB81138.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.636
KXB82196.1
IclR helix-turn-helix protein; KEGG: cnc:CNE_2c21920 7.0e-18 yddV; diguanylate cyclase YddV; Psort location: Cytoplasmic, score: 7.50.
  
     0.580
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.