STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80488.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
KXB80489.1
Hypothetical protein.
       0.773
KXB81501.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
  
     0.753
KXB81139.1
Hypothetical protein.
  
     0.751
KXB81633.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.702
KXB80537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.691
KXB82048.1
Zinc ribbon domain protein; KEGG: tgu:100228637 1.6e-06 CDC42BPA; CDC42 binding protein kinase alpha (DMPK-like); K08286 protein-serine/threonine kinase; Psort location: Cytoplasmic, score: 7.50.
  
     0.685
KXB79287.1
KEGG: mcu:HMPREF0573_10554 7.5e-53 gpmB; phosphoglycerate mutase; Psort location: Cytoplasmic, score: 7.50.
  
     0.661
KXB81607.1
KEGG: psp:PSPPH_2917 0.00012 DNA-binding protein K00517; Psort location: Cytoplasmic, score: 7.50.
  
     0.650
KXB81000.1
Hypothetical protein; KEGG: dbr:Deba_0747 0.0037 membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease.
  
     0.649
KXB80205.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.644
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.