STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80540.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (248 aa)    
Predicted Functional Partners:
KXB80538.1
Hypothetical protein; KEGG: pmq:PM3016_5551 0.0019 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.905
KXB80345.1
KEGG: fal:FRAAL1558 1.2e-43 ABC transporter ATP-binding protein K15600; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.831
KXB80539.1
Nucleic acid-binding domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.830
KXB80536.1
Hypothetical protein; KEGG: sna:Snas_4200 1.2e-05 2-oxoglutarate dehydrogenase E2 component, dihydrolipoamide succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); Psort location: Cytoplasmic, score: 7.50.
 
     0.759
KXB80537.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.744
KXB80512.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.659
KXB80344.1
NMT1/THI5-like protein; KEGG: pfc:PflA506_5153 1.3e-05 tauA_1; taurine ABC transporter, periplasmic taurine-binding protein K15551; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.638
KXB80347.1
NMT1/THI5-like protein; KEGG: mah:MEALZ_2389 6.3e-12 histidine kinase; K07679 two-component system, NarL family, sensor histidine kinase EvgS.
  
 
 0.638
KXB81800.1
Hypothetical protein.
  
     0.598
KXB81534.1
Putative hydrolase; Psort location: Cytoplasmic, score: 7.50.
  
     0.596
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.