STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80582.1KEGG: kse:Ksed_06020 2.2e-92 arginine deiminase; K01478 arginine deiminase; Psort location: Cytoplasmic, score: 7.50. (409 aa)    
Predicted Functional Partners:
KXB80583.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.999
argH
Argininosuccinate lyase; KEGG: ske:Sked_22260 2.5e-171 argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 7.50.
     
 0.924
argG
KEGG: cfl:Cfla_1647 1.5e-171 argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 7.50; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.923
KXB82071.1
KEGG: rer:RER_14720 4.9e-102 pta; phosphate acetyltransferase K13788; Psort location: Cytoplasmic, score: 7.50.
   
  
 0.652
KXB80580.1
SUF system FeS assembly protein, NifU family; KEGG: apb:SAR116_0470 5.7e-07 NifU-like protein K04488; Psort location: Cytoplasmic, score: 7.50.
     
 0.645
KXB80579.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.631
KXB80581.1
Hypothetical protein; KEGG: lru:HMPREF0538_22161 1.3e-14 yitW2; N-6 adenine-specific DNA methylase YitW; Psort location: Cytoplasmic, score: 7.50.
       0.631
KXB80513.1
Peptidase dimerization domain protein; KEGG: aai:AARI_16730 1.9e-102 zinc metallopeptidase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.511
KXB80578.1
KEGG: bbp:BBPR_0814 2.9e-90 sufC; FeS assembly protein SufC K09013; Psort location: Cytoplasmic, score: 9.97.
       0.511
KXB80575.1
KEGG: suc:ECTR2_773 2.2e-156 sufB; feS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
       0.508
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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