STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80305.1KEGG: mcu:HMPREF0573_11023 3.4e-295 dmsA; anaerobic dimethyl sulfoxide reductase subunit A K07306; Psort location: Cytoplasmic, score: 9.67; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (733 aa)    
Predicted Functional Partners:
KXB80303.1
Dimethylsulfoxide reductase, chain B; KEGG: pfr:PFREUD_20600 1.5e-93 dmsB; anaerobic dimethyl sulfoxide reductase subunit B K07307; Psort location: Cytoplasmic, score: 9.97.
 0.999
KXB80302.1
Hypothetical protein; KEGG: mcu:HMPREF0573_11021 9.2e-71 dmsC; anaerobic dimethyl sulfoxide reductase subunit C K07308; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.990
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.979
KXB80301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
 0.976
KXB79305.1
Nitrate reductase, beta subunit; KEGG: cgt:cgR_1267 2.4e-206 hypothetical protein; K00371 nitrate reductase 1, beta subunit; Psort location: CytoplasmicMembrane, score: 8.78.
   
 0.888
KXB81012.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: mcu:HMPREF0573_10721 5.0e-221 gltD; glutamate synthase (NADPH) small subunit; Psort location: Cytoplasmic, score: 9.97.
   
 0.871
KXB80304.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
   
 0.810
KXB79303.1
Transporter, major facilitator family protein; KEGG: hse:Hsero_3639 2.0e-68 narU; nitrite/nitrate transporter protein K02575; Psort location: CytoplasmicMembrane, score: 10.00.
    
 0.803
KXB81663.1
Putative membrane-bound hydrogenase 1 large subunit; KEGG: mcu:HMPREF0573_10781 2.7e-293 hupB; hydrogenase K06281; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
   
 0.714
KXB80300.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.680
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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