STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80266.1Hypothetical protein. (486 aa)    
Predicted Functional Partners:
KXB80265.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
      
0.678
KXB80264.1
Hypothetical protein.
      
0.624
KXB79231.1
Hypothetical protein; KEGG: dme:Dmel_CG12781 4.9e-18 nahoda; CG12781 gene product from transcript CG12781-RA; Psort location: Cellwall, score: 9.20.
   
  0.524
KXB81551.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: oih:OB2331 1.0e-60 bacillopeptidase F; K13276 bacillopeptidase F; Psort location: Extracellular, score: 9.72.
   
 0.490
KXB80268.1
Hypothetical protein.
       0.480
KXB80269.1
KEGG: rer:RER_49390 2.3e-12 signal peptidase I K13280.
       0.480
KXB81839.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
  0.453
KXB81576.1
Hypothetical protein; KEGG: rha:RHA1_ro04199 5.5e-11 DNA polymerase III subunits gamma and tau K02343; Psort location: Cellwall, score: 9.20.
   
  0.453
KXB81282.1
Hypothetical protein; KEGG: pct:PC1_2182 0.0030 pectate lyase; Psort location: CytoplasmicMembrane, score: 10.00.
    
   0.445
KXB81508.1
LPXTG-motif protein cell wall anchor domain protein.
   
  0.424
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.