STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80182.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (376 aa)    
Predicted Functional Partners:
KXB80569.1
Thiaminepyrophosphokinase, catalytic domain protein; KEGG: sit:TM1040_1966 0.00084 thiamine pyrophosphokinase; K00949 thiamine pyrophosphokinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.791
KXB80571.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.781
KXB80570.1
Hypothetical protein.
 
     0.780
KXB81791.1
KEGG: pys:Py04_0457 5.4e-15 putative glycosyl transferase family 2 protein; K00721 dolichol-phosphate mannosyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.777
KXB81792.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.775
KXB79251.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.771
KXB80572.1
Putative integral membrane protein MviN; KEGG: pfe:PSF113_5043 3.7e-19 murJ; protein MurJ K03980; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.741
KXB80184.1
DEAD/DEAH box helicase; KEGG: ace:Acel_1206 1.8e-186 DSH domain-containing protein; K03727 ATP-dependent RNA helicase HelY; Psort location: Cytoplasmic, score: 7.50.
       0.669
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
       0.615
KXB80186.1
Glycosyltransferase, group 2 family protein; KEGG: mcu:HMPREF0573_11692 6.2e-65 dolichyl-phosphate beta-D-mannosyltransferase K00721; Psort location: Cytoplasmic, score: 7.50.
       0.582
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.