STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80194.1KEGG: msm:MSMEG_3272 6.9e-50 ribose 5-phosphate isomerase K01808; Psort location: Cytoplasmic, score: 7.50. (163 aa)    
Predicted Functional Partners:
KXB80195.1
Transketolase; KEGG: cmi:CMM_1734 1.1e-230 tktA; transketolase K00615; Psort location: Cytoplasmic, score: 7.50; Belongs to the transketolase family.
  
 
 0.981
KXB82073.1
KEGG: cfi:Celf_1403 4.4e-48 ribose 5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B; Psort location: Cytoplasmic, score: 7.50.
  
  
 
0.935
KXB80179.1
KEGG: bcv:Bcav_2050 1.4e-76 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.927
KXB81884.1
KEGG: cfl:Cfla_0881 3.4e-128 ribose-phosphate pyrophosphokinase K00948; Psort location: Cytoplasmic, score: 9.97.
    
 0.924
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 
  0.906
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
 
    0.903
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
 
 
  0.841
KXB80191.1
Putative ribulokinase; KEGG: pak:HMPREF0675_5399 1.9e-182 FGGY-family pentulose kinase; Psort location: Cytoplasmic, score: 9.97.
    
  0.816
KXB80450.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: bfa:Bfae_22320 1.2e-185 PTS system IIA component/PTS system IIB component/PTS system IIC component; K02768 PTS system, fructose-specific IIA component; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.798
KXB80189.1
Ribulokinase; KEGG: pad:TIIST44_04410 4.7e-186 ribulokinase; K00853 L-ribulokinase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribulokinase family.
    
  0.794
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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