STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80216.1LytTr DNA-binding domain protein. (157 aa)    
Predicted Functional Partners:
KXB80217.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.909
KXB81853.1
Transporter, major facilitator family protein; KEGG: bsd:BLASA_0568 0.0011 tmk; thymidylate kinase; K00943 dTMP kinase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.542
KXB79855.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: awo:Awo_c34550 6.7e-155 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.512
KXB79340.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
     
 0.482
KXB80218.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.451
KXB80215.1
Addiction module antitoxin, RelB/DinJ family; Psort location: CytoplasmicMembrane, score: 9.55.
       0.408
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.