STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80217.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (147 aa)    
Predicted Functional Partners:
KXB80216.1
LytTr DNA-binding domain protein.
 
     0.909
KXB81853.1
Transporter, major facilitator family protein; KEGG: bsd:BLASA_0568 0.0011 tmk; thymidylate kinase; K00943 dTMP kinase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.722
KXB81854.1
Hypothetical protein; KEGG: gan:UMN179_01455 5.3e-52 phosphatidylinositol-specific phospholipase C, X domain containing protein; K01771 1-phosphatidylinositol phosphodiesterase; Psort location: Extracellular, score: 9.60.
  
     0.720
KXB81814.1
Cna protein B-type domain protein; KEGG: mmw:Mmwyl1_1672 6.4e-17 beta strand repeat-containing protein; Psort location: Cellwall, score: 9.93.
  
     0.710
KXB81017.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: mmw:Mmwyl1_1672 9.8e-18 beta strand repeat-containing protein.
  
     0.707
KXB79231.1
Hypothetical protein; KEGG: dme:Dmel_CG12781 4.9e-18 nahoda; CG12781 gene product from transcript CG12781-RA; Psort location: Cellwall, score: 9.20.
 
  
  0.662
KXB79354.1
YcaO-like family protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.647
KXB80681.1
Hypothetical protein; KEGG: gvg:HMPREF0421_20853 1.1e-09 brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.633
KXB80915.1
Hypothetical protein.
  
     0.604
KXB81863.1
Hypothetical protein; KEGG: sen:SACE_1077 1.2e-59 ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 7.50.
  
     0.603
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.