STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80029.1Pyruvate formate-lyase 1-activating enzyme; KEGG: mcu:HMPREF0573_10298 8.7e-91 pflA; [formate-C-acetyltransferase]-activating enzyme K04069; Psort location: Cytoplasmic, score: 9.97. (303 aa)    
Predicted Functional Partners:
KXB80031.1
KEGG: car:cauri_2089 0. pflB; formate acetyltransferase K00656; Psort location: Cytoplasmic, score: 9.97.
  
 0.991
KXB80030.1
KEGG: car:cauri_2088 7.6e-28 pflAC; autonomous glycyl radical cofactor GrcA; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.959
KXB81756.1
KEGG: jde:Jden_1798 9.3e-197 iron-containing alcohol dehydrogenase; K04072 acetaldehyde dehydrogenase / alcohol dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.793
KXB79334.1
Cyclic nucleotide-binding domain protein; KEGG: bde:BDP_1802 4.4e-48 Crp family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
    
 0.646
KXB82071.1
KEGG: rer:RER_14720 4.9e-102 pta; phosphate acetyltransferase K13788; Psort location: Cytoplasmic, score: 7.50.
     
 0.401
Your Current Organism:
Varibaculum cambriense
NCBI taxonomy Id: 184870
Other names: CCUG 44998, CIP 107344, DSM 15806, V. cambriense, Varibaculum cambriense corrig. Hall et al. 2003, Varibaculum cambriensis, strain R12359
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